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Introduction

  • Getting started
  • Basic concepts

Language

  • Scripts
  • Processes
  • Channels
  • Operators
  • Workflows
  • Modules
  • Configuration
  • Migrating from DSL 1

Execution

  • Command line interface (CLI)
  • Executors
  • Caching and resuming
  • Reports
  • Metrics
  • Pipeline sharing
  • Workflow introspection
  • Mail & Notifications
  • Plugins
  • Secrets

Software dependencies

  • Containers
  • Conda environments
  • Spack environments
  • Wave containers

Compute & storage platforms

  • AWS Cloud
  • AWS S3 storage
  • Azure Cloud
  • Fusion file system
  • Google Cloud
  • Kubernetes

Additional integrations

  • Flux Framework
  • Apache Ignite

Contributing

  • Overview
  • Packages
  • Core plugins
Nextflow is developed by:
Seqera Labs
Nextflow
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